{ "$id": "https://schemas.dissco.tech/schemas/fdo-profile/digital-specimen/1.0.0/digital-specimen.json", "$schema": "https://json-schema.org/draft/2020-12/schema", "description": "Kernel from which all DiSSCo DOI FDO profiles are derived", "$comment": "FDO Profile Version 1.0.0", "properties": { "fdoProfile": { "const": "https://doi.org/21.T11148/d8de0819e144e4096645", "description": "PID to a machine readable description of the attributes in the FDO record", "$comment": "idx = 1" }, "fdoRecordLicenseId": { "const": "https://spdx.org/licenses/CC0-1.0.json", "description": "The licence for the FDO record, required to be always public domain", "$comment": "idx = 2" }, "fdoRecordLicenseName": { "const": "CC0 1.0 Universal", "description": "Human readable version of the FDO Record license", "$comment": "idx = 3" }, "digitalObjectType": { "const": "https://doi.org/21.T11148/d8de0819e144e4096645", "description": "PID to a description of the Type of digital object that defines the metadata, bit sequences (if any) and operations for the object", "$comment": "idx = 4" }, "digitalObjectName": { "type": "string", "description": "Name of the object type for humans", "example": "digital specimen type 1", "$comment": "idx = 5" }, "pid": { "type": "string", "description": "The PID of which the FDO record is part, in DiSSCo this is a Handle or DOI. It is recommended to store this pid also in the local collection management system for the specimen.", "example": "https://doi.org/10.3535/GEE-W3J-HL2", "$comment": "idx = 6" }, "pidIssuer": { "type": "string", "description": "In case of a DOI this is a PID for the DOI Registration Agency", "example": "https://hdl.handle.net/10.17183", "$comment": "idx = 7" }, "pidIssuerName": { "type": "string", "description": "Human-readable name of the PID issuer", "example": "DataCite", "$comment": "idx = 8" }, "pidRecordIssueDate": { "type": "string", "description": "Date the PID record was created", "example": "2023-10-16T12:08:37.494Z", "$comment": "idx = 9" }, "pidRecordIssueNumber": { "type": "integer", "description": "Starts with 1 and is incrementally increased by 1 every time the pid record is updated. Compatible with DOI schema requirements.", "example": "2", "$comment": "idx = 10" }, "pidStatus": { "enum": [ "DRAFT", "ACTIVE", "TOMBSTONE" ], "description": "A PID is considered to have a lifecycle, PID status indicates the status in the life cycle, e.g. draft, active, retired. PID statuses are described further in the PID infrastructure design.", "$comment": "idx = 11" }, "HS_ADMIN": { "type": "string", "description": "Administrative information for PID profile", "$comment": "idx = 100" }, "tombstoneText": { "type": "string", "description": "A reason why the Digital Object was tombstoned", "examples": [ "This is a duplicate of XXX", "This object was made by mistake" ], "$comment": "idx = 30" }, "hasRelatedPid": { "type": "array", "description": "The PIDs of the object the tombstoned object is related to", "items": { "type": "object", "properties": { "pid": { "type": "string", "description": "The PID of the related object", "examples": [ "https://doi.org/10.1234/abcd" ] }, "relationshipType": { "type": "string", "description": "The type of relationship between the tombstoned object and the related object", "examples": [ "ods:relatedTo", "ods:isDuplicateOf" ] } }, "additionalProperties": false }, "$comment": "idx = 31" }, "tombstoneDate": { "type": "string", "description": "Timestamp the Digital Object was tombstoned and no longer active.", "format": "date-time", "examples": [ "2021-06-01T12:00:000Z" ], "$comment": "idx = 32" }, "10320/loc": { "type": "string", "description": "XML document describing location(s) of the resource", "$comment": "idx = 101", "example": "" }, "issuedForAgent": { "type": "string", "description": "In the case of a digital specimen, this is a PID for DiSSCo as the agent responsible for serving the digital specimen object", "example": "https://hdl.handle.net/10.3535", "$comment": "idx = 40" }, "issuedForAgentName": { "type": "string", "description": "Human-readable agent name", "example": "DiSSCo", "$comment": "idx = 41" }, "referentName": { "type": "string", "description": "In the case of a digital specimen this is the name for the object in the collection, which can be anything from a taxon name to a collection number. In the case of a media object, it is the media url without https://.", "example": "Mus musculus type 1", "$comment": "idx = 42" }, "specimenHost": { "type": "string", "description": "ROR or, in absence of a ROR, Wikidata Qnumber for the administrative organisation hosting the specimen. Same as: Latimer Core identifierSource.", "example": "https://ror.org/0566bfb96", "$comment": "idx = 200" }, "specimenHostName": { "type": "string", "description": "Name for the administrative organisation as derived from ROR or Wikidata at the point of creating the FDO record.", "example": "Naturalis Biodiversity Center", "$comment": "idx = 201" }, "normalisedPrimarySpecimenObjectId": { "type": "string", "description": "For internal processing purposes only to make a local identifier globally unique. This is the primarySpecimenObjectId if it is globally unique or a combination of ROR ID string, source system ID string, primarySpecimenObjectId if it is a proprietary identifier.", "example": "0566bfb96:20.5000.1025/GEE-W3J-HL2:RMNH.1.2b", "$comment": "idx = 203" }, "otherSpecimenIds": { "type": "array", "$comment": "idx = 207", "items": { "type": "object", "properties": { "identifierValue": { "type": "string" }, "identifierType": { "type": "string" }, "resolvable": { "type": "boolean", "description": "whether or not the identifier is resolvable" } }, "required": [ "identifierValue", "identifierType" ], "additionalProperties": false }, "$comment": "idx = 204" }, "topicOrigin": { "enum": [ "Natural", "Human-made", "Mixed origin", "Unclassified" ], "description": "Highest-level terms identifying the fundamentals of the activities, in which context the objects in the collection were collected.", "$comment": "idx = 205" }, "topicDomain": { "enum": [ "Life", "Environment", "Earth System", "Extraterrestrial", "Cultural Artefacts", "Archive Material", "Unclassified" ], "description": "High-level terms providing general domain information with which the objects are associated.", "$comment": "idx = 206" }, "topicDiscipline": { "enum": [ "Anthropology", "Botany", "Astrogeology", "Geology", "Microbiology", "Palaeontology", "Zoology", "Ecology", "Other Biodiversity", "Other Geodiversity", "Unclassified" ], "description": "Overarching classification of the scientific discipline to which the objects within the collection belong or are related.", "$comment": "idx = 207" }, "topicCategory": { "enum": [ "Human remains", "Hominid remains", "Macrofungi, Lichens & Myxomycetes", "Algae", "Bryophytes", "Pteridophytes", "Seed plants", "Other Botany Objects", "Insects", "Arachnids", "Crustaceans & Myriapods", "Porifera", "Mollusca", "Cnidaria", "Echinodermata", "Fishes", "Amphibians", "Reptiles", "Birds", "Mammals", "AnimalGeneticResources", "Other Zoology Objects", "Phages", "Bacteria & Archaea", "Plasmids", "Protozoa", "Eukaryotic microorganisms", "Viruses", "Microfungi", "Other Microbiology Objects", "Botany Fossils", "Invertebrate Fossils", "Vertebrate Fossils", "Other Palaeontology Objects", "Minerals and Gems", "Loose Sediment Sample", "Mixed Solid Matter Sample", "Water-Ice Sample", "Liquid or Gaseous Matter Sample", "Mixed Geology Objects", "Terrestrial Finds/Falls", "Terrestrial Impacta", "Sample Returns", "Sedimentary Rock", "Metamorphic or Igneous Rock", "Plant Genetic Resource", "Floral and Faunal remains", "Other Anthropology Objects", "Unclassified" ], "description": "Countable things (objects) served as a more detailed classification of each of the disciplines.", "$comment": "idx = 208" }, "livingOrPreserved": { "enum": [ "Living", "Preserved" ], "description": "State of specimen", "$comment": "idx = 209" }, "materialSampleType": { "enum": [ "Any biological specimen", "Biological material sample", "Fluid in container", "Fluid in container", "Non biologic solid object", "Research product" ], "description": "https://isamplesorg.github.io/models/generated/vocabularies/specimenType.html", "$comment": "idx = 211" }, "markedAsType": { "type": "boolean", "description": "TRUE if the specimen is marked as type with a stamp or label.\n", "$comment": "idx = 212" }, "catalogNumber": { "type": "string", "description": "Identifier of source system catalog", "$comment": "idx = 213" } }, "additionalProperties": false, "required": [ "fdoProfile", "fdoRecordLicenseId", "digitalObjectType", "digitalObjectName", "pid", "pidIssuer", "pidIssuerName", "issuedForAgent", "pidRecordIssueDate", "pidRecordIssueNumber", "pidStatus", "10320/loc", "referentName", "specimenHost", "specimenHostName", "normalisedPrimarySpecimenObjectId" ] }